Research in computational molecular biology : 17th Annual International Conference, RECOMB 2013, Beijing, China, April 7-10, 2013. Proceedings / Minghua Deng [and others] (eds.).

By: (17th : RECOMB (Conference : 2005- ) (17th : 2013 : Beijing, China)
Contributor(s): Deng, Minghua
Material type: TextTextSeries: SerienbezeichnungLecture notes in computer science: 7821.; Lecture notes in computer science: ; LNCS sublibrary: Publisher: Berlin ; New York : Springer, ©2013Description: 1 online resourceContent type: text Media type: computer Carrier type: online resourceISBN: 9783642371950; 3642371957; 3642371949; 9783642371943Other title: RECOMB 2013Subject(s): Computational biology -- Congresses | Bioinformatics -- Congresses | Biomathematics -- Congresses | Computational Biology | Gene Expression | Genomics -- methods | Sequence Analysis -- methods | Bioinformatics | Biomathematics | Computational biology | Biology | Health & Biological Sciences | Biology - General | Computer science | Computer software | Data mining | Computational Biology/Bioinformatics | Mathematical and Computational Biology | Algorithm Analysis and Problem Complexity | mathematische biologie | mathematical biology | computerwetenschappen | computer sciences | bioinformatics | computational science | algoritmen | algorithms | computeranalyse | computer analysis | datamining | Information and Communication Technology (General) | Informatie- en communicatietechnologie (algemeen)Genre/Form: Congress. | Electronic books. | Conference papers and proceedings. | Computer software. Additional physical formats: Printed edition:: No titleDDC classification: 570.285 LOC classification: QH324.2 | .I58 2013Other classification: 42.13 Online resources: Click here to access online
Contents:
Reconciliation Revisited: Handling Multiple Optima When Reconciling with Duplication, Transfer, and Loss / Mukul S. Bansal, Eric J. Alm, Manolis Kellis -- SEME: A Fast Mapper of Illumina Sequencing Reads with Statistical Evaluation / Shijian Chen, Anqi Wang, Lei M. Li -- Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype Model / Dong-Yeon Cho, Teresa M. Przytycka -- eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data / Itamar Eskin, Farhad Hormozdiari -- Analysis of Metabolic Evolution in Bacteria Using Whole-Genome Metabolic Models / Ali A. Faruqi, William A. Bryant -- Detecting Protein Conformational Changes in Interactions via Scaling Known Structures / Fei Guo, Shuai Cheng Li, Wenji Ma -- IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data / Dan He, Zhanyong Wang, Buhm Han -- An Optimal Algorithm for Building the Majority Rule Consensus Tree / Jesper Jansson, Chuanqi Shen, Wing-Kin Sung.
UniNovo : A Universal Tool for de Novo Peptide Sequencing / Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner -- Efficiently Identifying Significant Associations in Genome-Wide Association Studies / Emrah Kostem, Eleazar Eskin -- Identification of Ultramodified Proteins Using Top-Down Spectra / Xiaowen Liu, Shawna Hengel, Si Wu -- Distinguishing between Genomic Regions Bound by Paralogous Transcription Factors / Alina Munteanu, Raluca Gordân -- Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads / Sergey Nurk, Anton Bankevich, Dmitry Antipov -- Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data / Layla Oesper, Ahmad Mahmoody -- NP-MuScL: Unsupervised Global Prediction of Interaction Networks from Multiple Data Sources / Kriti Puniyani, Eric P. Xing -- High Resolution Modeling of Chromatin Interactions / Christopher Reeder, David Gifford -- A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs / Vladimir Reinharz, Yann Ponty.
An Accurate Method for Inferring Relatedness in Large Datasets of Unphased Genotypes via an Embedded Likelihood-Ratio Test / Jesse M. Rodriguez, Serafim Batzoglou -- Learning Natural Selection from the Site Frequency Spectrum / Roy Ronen, Nitin Udpa, Eran Halperin -- Considering Unknown Unknowns -- Reconstruction of Non-confoundable Causal Relations in Biological Networks / Mohammad Javad Sadeh, Giusi Moffa -- Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery / Raheleh Salari, Syed Shayon Saleh -- Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches / Evan Senter, Saad Sheikh, Ivan Dotu -- MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods / Michael Stevens, Jeffrey B. Cheng -- Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data / Ngoc Hieu Tran, Kwok Pui Choi, Louxin Zhang.
Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure / Chittaranjan Tripathy, Anthony K. Yan -- Genome-Wide Survival Analysis of Somatic Mutations in Cancer / Fabio Vandin, Alexandra Papoutsaki -- Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance / Mingxun Wang, Nuno Bandeira -- SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics / Sebastian Will, Christina Schmiedl -- An Algorithm for Constructing Parsimonious Hybridization Networks with Multiple Phylogenetic Trees / Yufeng Wu -- Fast and Accurate Calculation of Protein Depth by Euclidean Distance Transform / Dong Xu, Hua Li, Yang Zhang -- Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data / ZhiZhuo Zhang, Guoliang Li, Kim-Chuan Toh -- Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties / Lei Deng [and others].
Summary: This book constitutes the refereed proceedings of the 17th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2013, held in Beijing, China, in April 2013. The 32 revised full papers were carefully reviewed and selected from 167 submissions. The papers cover a wide range of topics including molecular sequence analysis; genes and regulatory elements; molecular evolution; gene expression; biological networks; sequencing and genotyping technologies; genomics; epigenomics; metagenomics; population, statistical genetics; systems biology; computational proteomics; computational structural biology; imaging; large-scale data management.
Tags from this library: No tags from this library for this title. Log in to add tags.
    Average rating: 0.0 (0 votes)
Item type Current location Collection Call number Status Date due Barcode Item holds
eBook eBook e-Library

Electronic Book@IST

EBook Available
Total holds: 0

Reconciliation Revisited: Handling Multiple Optima When Reconciling with Duplication, Transfer, and Loss / Mukul S. Bansal, Eric J. Alm, Manolis Kellis -- SEME: A Fast Mapper of Illumina Sequencing Reads with Statistical Evaluation / Shijian Chen, Anqi Wang, Lei M. Li -- Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype Model / Dong-Yeon Cho, Teresa M. Przytycka -- eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data / Itamar Eskin, Farhad Hormozdiari -- Analysis of Metabolic Evolution in Bacteria Using Whole-Genome Metabolic Models / Ali A. Faruqi, William A. Bryant -- Detecting Protein Conformational Changes in Interactions via Scaling Known Structures / Fei Guo, Shuai Cheng Li, Wenji Ma -- IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data / Dan He, Zhanyong Wang, Buhm Han -- An Optimal Algorithm for Building the Majority Rule Consensus Tree / Jesper Jansson, Chuanqi Shen, Wing-Kin Sung.

UniNovo : A Universal Tool for de Novo Peptide Sequencing / Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner -- Efficiently Identifying Significant Associations in Genome-Wide Association Studies / Emrah Kostem, Eleazar Eskin -- Identification of Ultramodified Proteins Using Top-Down Spectra / Xiaowen Liu, Shawna Hengel, Si Wu -- Distinguishing between Genomic Regions Bound by Paralogous Transcription Factors / Alina Munteanu, Raluca Gordân -- Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads / Sergey Nurk, Anton Bankevich, Dmitry Antipov -- Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data / Layla Oesper, Ahmad Mahmoody -- NP-MuScL: Unsupervised Global Prediction of Interaction Networks from Multiple Data Sources / Kriti Puniyani, Eric P. Xing -- High Resolution Modeling of Chromatin Interactions / Christopher Reeder, David Gifford -- A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs / Vladimir Reinharz, Yann Ponty.

An Accurate Method for Inferring Relatedness in Large Datasets of Unphased Genotypes via an Embedded Likelihood-Ratio Test / Jesse M. Rodriguez, Serafim Batzoglou -- Learning Natural Selection from the Site Frequency Spectrum / Roy Ronen, Nitin Udpa, Eran Halperin -- Considering Unknown Unknowns -- Reconstruction of Non-confoundable Causal Relations in Biological Networks / Mohammad Javad Sadeh, Giusi Moffa -- Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery / Raheleh Salari, Syed Shayon Saleh -- Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches / Evan Senter, Saad Sheikh, Ivan Dotu -- MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods / Michael Stevens, Jeffrey B. Cheng -- Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data / Ngoc Hieu Tran, Kwok Pui Choi, Louxin Zhang.

Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure / Chittaranjan Tripathy, Anthony K. Yan -- Genome-Wide Survival Analysis of Somatic Mutations in Cancer / Fabio Vandin, Alexandra Papoutsaki -- Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance / Mingxun Wang, Nuno Bandeira -- SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics / Sebastian Will, Christina Schmiedl -- An Algorithm for Constructing Parsimonious Hybridization Networks with Multiple Phylogenetic Trees / Yufeng Wu -- Fast and Accurate Calculation of Protein Depth by Euclidean Distance Transform / Dong Xu, Hua Li, Yang Zhang -- Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data / ZhiZhuo Zhang, Guoliang Li, Kim-Chuan Toh -- Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties / Lei Deng [and others].

International conference proceedings.

Includes author index.

This book constitutes the refereed proceedings of the 17th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2013, held in Beijing, China, in April 2013. The 32 revised full papers were carefully reviewed and selected from 167 submissions. The papers cover a wide range of topics including molecular sequence analysis; genes and regulatory elements; molecular evolution; gene expression; biological networks; sequencing and genotyping technologies; genomics; epigenomics; metagenomics; population, statistical genetics; systems biology; computational proteomics; computational structural biology; imaging; large-scale data management.

Includes bibliographical references and index.

There are no comments for this item.

to post a comment.

Powered by Koha