Bioinformatics research and applications : 9th International Symposium, ISBRA 2013, Charlotte, NC, USA, May 20-22, 2013, proceedings / Zhipeng Cai, Oliver Eulenstein, Daniel Janies, Daniel Schwartz (eds.).

By: (9th : ISBRA (Conference) (9th : 2013 : Charlotte, N.C.)
Contributor(s): Cai, Zhipeng [editior of compilation.] | Eulenstein, Oliver [editor.] | Janies, Daniel [editor.] | Schwartz, Daniel [editor.]
Material type: TextTextSeries: SerienbezeichnungLecture notes in computer science: ; LNCS sublibrary: Publisher: Berlin ; New York : Springer, ©2013Description: 1 online resource (xiii, 312 pages) : illustrationsContent type: text Media type: computer Carrier type: online resourceISBN: 9783642380365; 3642380360; 3642380352; 9783642380358Other title: ISBRA 2013Subject(s): Bioinformatics -- Congresses | Computational Biology | Bioinformatics | Biology | Health & Biological Sciences | Biology - General | computerwetenschappen | computer sciences | bioinformatics | computational science | informatiesystemen | information systems | internet | patroonherkenning | pattern recognition | algoritmen | algorithms | computeranalyse | computer analysis | computertechnieken | computer techniques | levenswetenschappen | life sciences | datamining | data mining | Information and Communication Technology (General) | Informatie- en communicatietechnologie (algemeen)Genre/Form: Congress. | Electronic books. | Ebook. | Conference papers and proceedings. | Computer software. Additional physical formats: Print version:: BIOINFORMATICS RESEARCH AND APPLICATIONS: ED BY ZHIPENG CAI.DDC classification: 570.285 LOC classification: QH324.2 | .I83 2013Other classification: 42.11 Online resources: Click here to access online
Contents:
Peptide Identification from Mass Spectrometry / Bin Ma -- Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers / Luonan Chen -- Computational Behavioral Ecology / Tanya Berger-Wolf -- Unusual RNA Structures: Information Content in RNAs from the "Prebiotic Ribosome" to Modern Viruses / Stephen C. Harvey -- The Radiation Hybrid Map Construction Problem Is FPT / Iyad Kanj, Ge Xia, Binhai Zhu -- Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models / Fei Hu, Lingxi Zhou, Jijun Tang -- Computational Methods for the Parallel 3D Simulation of Biochemical Kinetics at the Microscopic Scale / Laurent Crépin, Fabrice Harrouet -- A Tool for Non-binary Tree Reconciliation / Yu Zheng, Louxin Zhang -- Patterns of Chromatin-Modifications Discriminate Different Genomic Features in Arabidopsis / Anuj Srivastava, Xiaoyu Zhang, Sal LaMarca -- Inferring Time-Delayed Gene Regulatory Networks Using Cross-Correlation and Sparse Regression / Piyushkumar A. Mundra, Jie Zheng -- A Simulation of Synthetic agr System in E.coli / Xiangmiao Zeng, Ke Liu, Fangping Xie -- Gene Regulatory Networks from Gene Ontology / Wenting Liu [and others] -- Partitioning Biological Networks into Highly Connected Clusters with Maximum Edge Coverage / Falk Hüffner, Christian Komusiewicz -- Reconstructing k-Reticulated Phylogenetic Network from a Set of Gene Trees / Hoa Vu, Francis Chin, W.K. Hon, Henry Leung -- LCR_Finder: A de Novo Low Copy Repeat Finder for Human Genome / Xuan Liu, David Wai-lok Cheung, Hing-Fung Ting -- Heuristic Algorithms for the Protein Model Assignment Problem / Jörg Hauser, Kassian Kobert -- Alignment of DNA Mass-Spectral Profiles Using Network Flows / Pavel Skums, Olga Glebova, Alex Zelikovsky -- A Context-Driven Gene Prioritization Method for Web-Based Functional Genomics.
Summary: This book constitutes the refereed proceedings of the 9th International Symposium on Bioinformatics Research and Applications, ISBRA 2013, held in Charlotte, NC, USA, in May 2013. The 25 revised full papers presented together with 4 invited talks were carefully reviewed and selected from 46 submissions. The papers cover a wide range of biomedical databases and data integration, high-performance bio-computing, biomolecular imaging, high-throughput sequencing data analysis, bio-ontologies, molecular evolution, comparative genomics and phylogenomics, molecular modeling and simulation, pattern discovery and classification, computational proteomics, population genetics, data mining and visualization, software tools and applications.
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Peptide Identification from Mass Spectrometry / Bin Ma -- Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers / Luonan Chen -- Computational Behavioral Ecology / Tanya Berger-Wolf -- Unusual RNA Structures: Information Content in RNAs from the "Prebiotic Ribosome" to Modern Viruses / Stephen C. Harvey -- The Radiation Hybrid Map Construction Problem Is FPT / Iyad Kanj, Ge Xia, Binhai Zhu -- Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models / Fei Hu, Lingxi Zhou, Jijun Tang -- Computational Methods for the Parallel 3D Simulation of Biochemical Kinetics at the Microscopic Scale / Laurent Crépin, Fabrice Harrouet -- A Tool for Non-binary Tree Reconciliation / Yu Zheng, Louxin Zhang -- Patterns of Chromatin-Modifications Discriminate Different Genomic Features in Arabidopsis / Anuj Srivastava, Xiaoyu Zhang, Sal LaMarca -- Inferring Time-Delayed Gene Regulatory Networks Using Cross-Correlation and Sparse Regression / Piyushkumar A. Mundra, Jie Zheng -- A Simulation of Synthetic agr System in E.coli / Xiangmiao Zeng, Ke Liu, Fangping Xie -- Gene Regulatory Networks from Gene Ontology / Wenting Liu [and others] -- Partitioning Biological Networks into Highly Connected Clusters with Maximum Edge Coverage / Falk Hüffner, Christian Komusiewicz -- Reconstructing k-Reticulated Phylogenetic Network from a Set of Gene Trees / Hoa Vu, Francis Chin, W.K. Hon, Henry Leung -- LCR_Finder: A de Novo Low Copy Repeat Finder for Human Genome / Xuan Liu, David Wai-lok Cheung, Hing-Fung Ting -- Heuristic Algorithms for the Protein Model Assignment Problem / Jörg Hauser, Kassian Kobert -- Alignment of DNA Mass-Spectral Profiles Using Network Flows / Pavel Skums, Olga Glebova, Alex Zelikovsky -- A Context-Driven Gene Prioritization Method for Web-Based Functional Genomics.

International conference proceedings.

Includes author index.

Print version record.

This book constitutes the refereed proceedings of the 9th International Symposium on Bioinformatics Research and Applications, ISBRA 2013, held in Charlotte, NC, USA, in May 2013. The 25 revised full papers presented together with 4 invited talks were carefully reviewed and selected from 46 submissions. The papers cover a wide range of biomedical databases and data integration, high-performance bio-computing, biomolecular imaging, high-throughput sequencing data analysis, bio-ontologies, molecular evolution, comparative genomics and phylogenomics, molecular modeling and simulation, pattern discovery and classification, computational proteomics, population genetics, data mining and visualization, software tools and applications.

Includes bibliographical references and author index.

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