Phylogenomics / edited by William J. Murphy.

Contributor(s): Murphy, William J., Ph. D
Material type: TextTextSeries: Methods in molecular biology (Clifton, N.J.): v. 422.Publisher: Totowa, N.J. : Humana Press, ©2008Description: 1 online resource (x, 259 pages) : illustrationsContent type: text Media type: computer Carrier type: online resourceISBN: 9781597455817; 1597455814Subject(s): Phylogeny | Genomics | Cytogenetics | Phylogeny | Molecular Biology | Genomics | Genetics | Biochemistry | Computational Biology | Genetic Phenomena | Biological Evolution | Classification | Information Science | Biological Science Disciplines | Biology | Biological Phenomena | Phenomena and Processes | Chemistry | Natural Science Disciplines | Disciplines and Occupations | Phylogenèse | Génomique | Genomics | Phylogeny | Phylogenie | Genanalyse | fylogenetica | phylogenetics | fylogenie | phylogeny | cytogenetica | cytogenetics | bacterial artificial chromosomes | chromosomen | chromosomes | evolutie | evolution | genomen | genomes | biologische technieken | biological techniques | genexpressieanalyse | genomics | protocollen | protocols | Genome informatics | GenoominformaticaGenre/Form: Laboratory Manual. | Aufsatzsammlung. Additional physical formats: Print version:: Phylogenomics.DDC classification: 576.8/8 LOC classification: QH367.5 | .P49 2008Other classification: WH 2600 | BIO 175f | CHE 885f | CHE 808f Online resources: Click here to access online
Contents:
From gene-scale to genome-scale phylogenetics : the data flood in, but the challenges remain / Antonis Rokas and Stylianos Chatzimanolis -- Phylogenomic analysis of chromosome sorting and painting / Roscoe Stanyon and Gary Stone -- FISH for mapping single copy genes / Terje Raudsepp and Bhanu P. Chowdhary -- Construction of radiation hybrid panels / John E. Page and William J. Murphy -- Survey sequencing and radiation hybrid mapping to construct comparative maps / Christophe Hitte [and others] -- Construction of high-resolution comparative maps in mammals using BAC-end sequences / Denis M. Larkin and Harris A. Lewin -- Amniote phylogenomics : testing evolutionary hypotheses with BAC library scanning and targeted clone analysis of large-scale sequences from reptiles / Andrew M. Shedlock, Daniel E. Janes, and Scott V. Edwards -- Comparative physical mapping : universal overgo hybridization probe design and BAC library hybridization / James W. Thomas -- Phylogenomic resources at the UCSC Genome Browser / Kate Rosenbloom [and others] -- Computational tools for the analysis of rearrangements in mammalian genomes / Glenn Tesler and Guillaume Bourque -- Computational reconstruction of ancestral DNA sequences / Mathieu Blanchette [and others] -- Sequencing and phylogenomic analysis of whole mitochondrial genomes of animals / Rafael Zardoya and Mónica Suárez -- Retroposons : genetic footrpints on the evolutionary paths of life / Hidenori Nishihara and Norihiro Okada -- LINE-1 elements : analysis by FISH and nucleotide sequences / Paul D. Waters [and others] -- Identification of cryptic sex chromosomes and isolation of X- and Y-borne genes / Paul D. Waters [and others].
Action note: digitized 2011 committed to preserveSummary: The past decade has seen the emergence of a new field of scientific inquiry at the intersection of phylogenetics and genomics - phylogenomics. This collection of protocols and resources describes many of the molecular methods and bioinformatics tools that have brought this field to fruition.
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Includes bibliographical references and index.

From gene-scale to genome-scale phylogenetics : the data flood in, but the challenges remain / Antonis Rokas and Stylianos Chatzimanolis -- Phylogenomic analysis of chromosome sorting and painting / Roscoe Stanyon and Gary Stone -- FISH for mapping single copy genes / Terje Raudsepp and Bhanu P. Chowdhary -- Construction of radiation hybrid panels / John E. Page and William J. Murphy -- Survey sequencing and radiation hybrid mapping to construct comparative maps / Christophe Hitte [and others] -- Construction of high-resolution comparative maps in mammals using BAC-end sequences / Denis M. Larkin and Harris A. Lewin -- Amniote phylogenomics : testing evolutionary hypotheses with BAC library scanning and targeted clone analysis of large-scale sequences from reptiles / Andrew M. Shedlock, Daniel E. Janes, and Scott V. Edwards -- Comparative physical mapping : universal overgo hybridization probe design and BAC library hybridization / James W. Thomas -- Phylogenomic resources at the UCSC Genome Browser / Kate Rosenbloom [and others] -- Computational tools for the analysis of rearrangements in mammalian genomes / Glenn Tesler and Guillaume Bourque -- Computational reconstruction of ancestral DNA sequences / Mathieu Blanchette [and others] -- Sequencing and phylogenomic analysis of whole mitochondrial genomes of animals / Rafael Zardoya and Mónica Suárez -- Retroposons : genetic footrpints on the evolutionary paths of life / Hidenori Nishihara and Norihiro Okada -- LINE-1 elements : analysis by FISH and nucleotide sequences / Paul D. Waters [and others] -- Identification of cryptic sex chromosomes and isolation of X- and Y-borne genes / Paul D. Waters [and others].

Print version record.

The past decade has seen the emergence of a new field of scientific inquiry at the intersection of phylogenetics and genomics - phylogenomics. This collection of protocols and resources describes many of the molecular methods and bioinformatics tools that have brought this field to fruition.

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Electronic reproduction. [Place of publication not identified] : HathiTrust Digital Library, 2011. MiAaHDL

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