DNA barcodes : methods and protocols / edited by W. John Kress, David L. Erickson.

Contributor(s): Kress, W. John | Erickson, David L. (Biologist)
Material type: TextTextSeries: Methods in molecular biology (Clifton, N.J.): 858.Publisher: New York : Humana Press, ©2012Description: 1 online resource (xv, 470 pages) : illustrations (some color)Content type: text Media type: computer Carrier type: online resourceISBN: 9781617795916; 1617795917; 1617795909; 9781617795909Subject(s): Genetic markers | DNA data banks | Information Storage and Retrieval | Publication Formats | Sequence Analysis, DNA | Molecular Typing | Investigative Techniques | Medical Informatics Applications | Information Science | Sequence Analysis | Genetic Techniques | Analytical, Diagnostic and Therapeutic Techniques and Equipment | Publication Characteristics | Medical Informatics | DNA Barcoding, Taxonomic | Data Mining | Laboratory Manuals | Methods | DNA data banks | Genetic markers | Medicine | Human genetics | Plant breeding | Animal genetics | Biomedicine | Animal Genetics and Genomics | Plant Genetics & Genomics | biomedische wetenschappen | genomica | genomics | diergenetica | plantengenetica | plant genetics | humane genetica | Medicine (General) | Geneeskunde (algemeen)Genre/Form: Laboratory Manual. | Electronic books. Additional physical formats: Print version:: DNA barcodes.DDC classification: 572.8/6 LOC classification: QH438.4.B55 | D53 2012Online resources: Click here to access online
Contents:
DNA barcodes : methods and protocols / W. John Kress and David L. Erickson -- Introduction to animal DNA barcoding protocols / Lee A. Weigt, Amy C. Driskell, Andrea Ormos, Christopher Meyer, and Allen Collins -- DNA barcodes for insects / John James Wilson -- DNA barcoding methods for invertebrates / Nathaniel Evans and Gustav Paulay -- DNA barcoding amphibians and reptiles / Miguel Vences, Zoltán T. Nagy, Gontran Sonet, and Erik Verheyen -- DNA barcoding fishes / Lee A. Weigt, Amy Driskell, Carole C. Baldwin, and Andrea Ormos -- DNA barcoding birds : from field collection to data analysis / Darío A. Lijtmaer, Kevin C.R. Kerr, Mark Y. Stoeckle, and Pablo L. Tubaro -- DNA barcoding in mammals / Natalia V. Ivanova, Elizabeth L. Clare, and Alex V. Borisenko -- Methods for DNA barcoding of fungi / Ursula Eberhardt -- Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms / Gary W. Saunders and Daniel C. McDevit -- DNA barcoding methods for land plants / Aron J. Fazekas, Maria L. Kuzmina, Steven G. Newmaster, and Peter M. Hollingsworth -- Field information management systems for DNA barcoding / John Deck, Joyce Cross, Steven Stones-Havas, Neil Davies, Rebecca Shapley, and Christopher Meyer -- Laboratory information management systems for DNA barcoding / Meaghan Parker, Steven Stones-Havas, Craig Starger, and Christopher Meyer -- DNA extraction, preservation, and amplification / Thomas Knebelsberger and Isabella Stöger -- DNA mini-barcodes / Mehrdad Hajibabaei and Charly McKenna -- Ways to mix multiple PCR amplicons into single 454 run for DNA barcoding / Ryuji J. Machida and Nancy Knowlton -- Practical evaluation of DNA barcode efficacy / John L. Spouge and Leonardo Mariño-Ramírez -- Plant DNA Barcodes, Taxonomic Management and Species Discovery in Tropical Forests / Christopher W. Dick and Campbell O. Webb -- Construction and Analysis of Phylogenetic Trees Using DNA Barcode Data / David L. Erickson and Amy C. Driskell -- Phylogenetic analyses of ecological communities using DNA barcode data / Nathan G. Swenson -- FISH-BOL, a case study for DNA barcodes / Robert D. Ward -- Generating plant DNA barcodes for trees in long-term forest dynamics plots / W. John Kress, Ida C. Lopez, and David L. Erickson -- Future directions / David L. Erickson and W. John Kress.
Summary: A DNA barcode in its simplest definition is one or more short gene sequences taken from a standardized portion of the genome that is used to identify species through reference to DNA sequence libraries or databases. In DNA Barcodes: Methods and Protocols expert researchers in the field detail many of the methods which are now commonly used with DNA barcodes. These methods include the latest information on techniques for generating, applying, and analyzing DNA barcodes across the Tree of Life including animals, fungi, protists, algae, and plants. Written in the highly successful Methods in Molecular Biology series format, the chapters include the kind of detailed description and implementation advice that is crucial for getting optimal results in the laboratory. Thorough and intuitive, DNA Barcodes: Methods and Protocols aids scientists in continuing to study methods from wet-lab protocols, statistical, and ecological analyses along with guides to future, large-scale collections campaigns.
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Includes bibliographical references and index.

DNA barcodes : methods and protocols / W. John Kress and David L. Erickson -- Introduction to animal DNA barcoding protocols / Lee A. Weigt, Amy C. Driskell, Andrea Ormos, Christopher Meyer, and Allen Collins -- DNA barcodes for insects / John James Wilson -- DNA barcoding methods for invertebrates / Nathaniel Evans and Gustav Paulay -- DNA barcoding amphibians and reptiles / Miguel Vences, Zoltán T. Nagy, Gontran Sonet, and Erik Verheyen -- DNA barcoding fishes / Lee A. Weigt, Amy Driskell, Carole C. Baldwin, and Andrea Ormos -- DNA barcoding birds : from field collection to data analysis / Darío A. Lijtmaer, Kevin C.R. Kerr, Mark Y. Stoeckle, and Pablo L. Tubaro -- DNA barcoding in mammals / Natalia V. Ivanova, Elizabeth L. Clare, and Alex V. Borisenko -- Methods for DNA barcoding of fungi / Ursula Eberhardt -- Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms / Gary W. Saunders and Daniel C. McDevit -- DNA barcoding methods for land plants / Aron J. Fazekas, Maria L. Kuzmina, Steven G. Newmaster, and Peter M. Hollingsworth -- Field information management systems for DNA barcoding / John Deck, Joyce Cross, Steven Stones-Havas, Neil Davies, Rebecca Shapley, and Christopher Meyer -- Laboratory information management systems for DNA barcoding / Meaghan Parker, Steven Stones-Havas, Craig Starger, and Christopher Meyer -- DNA extraction, preservation, and amplification / Thomas Knebelsberger and Isabella Stöger -- DNA mini-barcodes / Mehrdad Hajibabaei and Charly McKenna -- Ways to mix multiple PCR amplicons into single 454 run for DNA barcoding / Ryuji J. Machida and Nancy Knowlton -- Practical evaluation of DNA barcode efficacy / John L. Spouge and Leonardo Mariño-Ramírez -- Plant DNA Barcodes, Taxonomic Management and Species Discovery in Tropical Forests / Christopher W. Dick and Campbell O. Webb -- Construction and Analysis of Phylogenetic Trees Using DNA Barcode Data / David L. Erickson and Amy C. Driskell -- Phylogenetic analyses of ecological communities using DNA barcode data / Nathan G. Swenson -- FISH-BOL, a case study for DNA barcodes / Robert D. Ward -- Generating plant DNA barcodes for trees in long-term forest dynamics plots / W. John Kress, Ida C. Lopez, and David L. Erickson -- Future directions / David L. Erickson and W. John Kress.

Online resource; title from PDF title page (Springer Protocols, viewed Oct. 17, 2012).

A DNA barcode in its simplest definition is one or more short gene sequences taken from a standardized portion of the genome that is used to identify species through reference to DNA sequence libraries or databases. In DNA Barcodes: Methods and Protocols expert researchers in the field detail many of the methods which are now commonly used with DNA barcodes. These methods include the latest information on techniques for generating, applying, and analyzing DNA barcodes across the Tree of Life including animals, fungi, protists, algae, and plants. Written in the highly successful Methods in Molecular Biology series format, the chapters include the kind of detailed description and implementation advice that is crucial for getting optimal results in the laboratory. Thorough and intuitive, DNA Barcodes: Methods and Protocols aids scientists in continuing to study methods from wet-lab protocols, statistical, and ecological analyses along with guides to future, large-scale collections campaigns.

English.

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