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The nucleus / edited by Ronald Hancock.

Contributor(s): Hancock, Ronald [editor]Material type: TextTextSeries: Methods in molecular biology (Clifton, N.J.) ; v. 1228.Publisher: New York : Humana Press, [2015]Copyright date: ©2015Edition: Second editionDescription: 1 online resource (xi, 237 pages) : illustrations (some color)Content type: text Media type: computer Carrier type: online resourceISBN: 9781493916801; 1493916807; 1493916793; 9781493916795Subject(s): Cell nuclei -- Research -- Laboratory manuals | Cell Nucleus | Cell Nucleus Structures | Cytological Techniques | Science -- Life Sciences -- Biology -- Molecular Biology | Cellular biology (cytology)Genre/Form: Electronic books. | Laboratory manuals. Additional physical formats: Print version:: Nucleus.DDC classification: 571.66 LOC classification: QH595NLM classification: W1 | QU 25Online resources: Click here to access online
Contents:
Cell type-specific affinity purification of nuclei for chromatin profiling in whole animals / Florian A. Steiner and Steven Henikoff -- Lysis gradient centrifugation : a flexible method for the isolation of nuclei from primary cells / Karl Katholnig [and others] -- Isolation of nuclei in media containing an inert polymer to mimic the crowded cytoplasm / Ronald Hancock and Yasmina Hadj-Sahraoui -- New rapid method for isolating nucleoli / Zhou Fang Li and Yun Wah Lam -- Sequential recovery of macromolecular components of the nucleolus / Baoyan Bai and Marikki Laiho -- Au nanoinjectors for electrotriggered gene delivery into the cell nucleus / Mijeong Kang and Bongsoo Kim -- Improving chromatin immunoprecipitation (ChIP) by suppression of method-induced DNA-damage signaling / Sascha Beneke -- Purification of specific chromatin loci for proteomic analysis / Stephanie D. Byrum, Sean D. Taverna, and Alan J. Tackett-- Chromatin structure analysis of single gene molecules by psoralen cross-linking and electron microscopy / Christopher R. Brown [and others] -- Purification of proteins on newly synthesized DNA using iPOND / Huzefa Dungrawala and David Cortez -- Applying the ribopuromycylation method to detect nuclear translation / Alexandre David and Jonathan W. Yewdell -- Targeted nano analysis of water and ions in the nucleus using cryo-correlative microscopy / Frédérique Nolin [and others] -- Redox-sensitive yellow fluorescent protein sensor for monitoring nuclear glutathione redox dynamics / Agata Banach-Latapy, Michèle Dardalhon, and Meng-Er Huang -- Determination of the dissociation constant of the NF[Kappa]B p50/p65 heterodimer in living cells using fluorescence cross-correlation spectroscopy / Manisha Tiwari and Masataka Kinjo -- Imaging and quantification of amyloid fibrillation in the cell nucleus / Florian Arnhold, Andrea Scharf, and Anna von Mikecz -- Analysis of nuclear organization with TANGO, software for high-throughput quantitative analysis of 3D fluorescence microscopy images / Jean Ollion [and others] -- Quantitative analysis of chromosome localization in the nucleus / Sandeep Chakraborty [and others].
Summary: This volume presents detailed, recently-developed protocols ranging from isolation of nuclei to purification of chromatin regions containing single genes, with a particular focus on some less well-explored aspects of the nucleus. The methods described include new strategies for isolation of nuclei, for purification of cell type-specific nuclei from a mixture, and for rapid isolation and fractionation of nucleoli. For gene delivery into and expression in nuclei, a novel gentle approach using gold nanowires is presented. As the concentration and localization of water and ions are crucial for macromolecular interactions in the nucleus, a new approach to measure these parameters by correlative optical and cryo-electron microscopy is described. The Nucleus, Second Edition presents methods and software for high-throughput quantitative analysis of 3D fluorescence microscopy images, for quantification of the formation of amyloid fibrils in the nucleus, and for quantitative analysis of chromosome territory localization. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Â Authoritative and easily accessible, The Nucleus, Second Edition seeks to serve both professionals and novices with its well-honed methods for the study of the nucleus.
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Includes bibliographical references and indexes.

Cell type-specific affinity purification of nuclei for chromatin profiling in whole animals / Florian A. Steiner and Steven Henikoff -- Lysis gradient centrifugation : a flexible method for the isolation of nuclei from primary cells / Karl Katholnig [and others] -- Isolation of nuclei in media containing an inert polymer to mimic the crowded cytoplasm / Ronald Hancock and Yasmina Hadj-Sahraoui -- New rapid method for isolating nucleoli / Zhou Fang Li and Yun Wah Lam -- Sequential recovery of macromolecular components of the nucleolus / Baoyan Bai and Marikki Laiho -- Au nanoinjectors for electrotriggered gene delivery into the cell nucleus / Mijeong Kang and Bongsoo Kim -- Improving chromatin immunoprecipitation (ChIP) by suppression of method-induced DNA-damage signaling / Sascha Beneke -- Purification of specific chromatin loci for proteomic analysis / Stephanie D. Byrum, Sean D. Taverna, and Alan J. Tackett-- Chromatin structure analysis of single gene molecules by psoralen cross-linking and electron microscopy / Christopher R. Brown [and others] -- Purification of proteins on newly synthesized DNA using iPOND / Huzefa Dungrawala and David Cortez -- Applying the ribopuromycylation method to detect nuclear translation / Alexandre David and Jonathan W. Yewdell -- Targeted nano analysis of water and ions in the nucleus using cryo-correlative microscopy / Frédérique Nolin [and others] -- Redox-sensitive yellow fluorescent protein sensor for monitoring nuclear glutathione redox dynamics / Agata Banach-Latapy, Michèle Dardalhon, and Meng-Er Huang -- Determination of the dissociation constant of the NF[Kappa]B p50/p65 heterodimer in living cells using fluorescence cross-correlation spectroscopy / Manisha Tiwari and Masataka Kinjo -- Imaging and quantification of amyloid fibrillation in the cell nucleus / Florian Arnhold, Andrea Scharf, and Anna von Mikecz -- Analysis of nuclear organization with TANGO, software for high-throughput quantitative analysis of 3D fluorescence microscopy images / Jean Ollion [and others] -- Quantitative analysis of chromosome localization in the nucleus / Sandeep Chakraborty [and others].

This volume presents detailed, recently-developed protocols ranging from isolation of nuclei to purification of chromatin regions containing single genes, with a particular focus on some less well-explored aspects of the nucleus. The methods described include new strategies for isolation of nuclei, for purification of cell type-specific nuclei from a mixture, and for rapid isolation and fractionation of nucleoli. For gene delivery into and expression in nuclei, a novel gentle approach using gold nanowires is presented. As the concentration and localization of water and ions are crucial for macromolecular interactions in the nucleus, a new approach to measure these parameters by correlative optical and cryo-electron microscopy is described. The Nucleus, Second Edition presents methods and software for high-throughput quantitative analysis of 3D fluorescence microscopy images, for quantification of the formation of amyloid fibrils in the nucleus, and for quantitative analysis of chromosome territory localization. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Â Authoritative and easily accessible, The Nucleus, Second Edition seeks to serve both professionals and novices with its well-honed methods for the study of the nucleus.

Other editions of this work

Other editions
The nucleus. ©2008
The nucleus. ©2008
The nucleus. ©2008
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